Month: August 2011

An update on JoVE

Sorry We're Closed by bluecinderella on FlickrThree years ago, I wrote about JoVE, the Journal of Visualized Experiments. JoVE was a peer reviewed, open access, online journal devoted to the publication of biological research in a video format. I recently discovered that since 2009, JoVE is now just a peer reviewed, open access, online journal devoted to the publication of biological research in a video format. You can debate at length on whether JoVE was Open Access (as I thought) or not. I just think it’s sad although I understand their motives: in a recent exchange with them, they wrote they “handle most production of our content [themselves] and it is a very very costly operation”.

The recent exchange I had with Jove was about another previous post describing a way to store the videos locally, as anyone would do with Open Access articles in PDF format. I was unaware of two things:

  1. JoVE dropped the “Open Access” wording as I wrote above (however, there is still a possibility to publish a video in free access for a higher fee, as described as “Open access” in the About section for authors);
  2. the “trick” was still working (and people at JoVE seemed to be aware of that and I saw similar description of the trick elsewhere).

Unfortunately, this trick will not work anymore in the coming weeks since they will “do token authentication with [their] CDN“. JoVE will remain for me a very interesting journal with videos of quality and without any equivalent yet (SciVee doesn’t play in the same playground and I wonder why Research Explainer missed the comparison in their 2010 interview).

I was then wondering what could have been the impact of this decision on the number of videos published in JoVE as free access. I didn’t find any statistics related to this on the JoVE website (unrelated thought: I like the way BioMed Central gives access to its whole corpus). I then relied on PubMed to find all the indexed articles from JoVE and relied on its classification of “Free Full Text” (i.e. copied on the PubMed Central website, including the video). At the time of writing (August 2011), on a total of 1191 indexed articles, 404 are “Free Full Text”. This is nearly 34% of all JoVE articles. When you split this by year since 2006 (when JoVE went online), you obtain the following table and chart:

Year All articles Free Full Text articles Note
2006 18 18 Full free access
2007 127 127 Full free access
2008 115 87
2009 217 118 Introduction of Closed Access
2010 358 42
2011 356 12 So far (August 2011)
2011 534 18 Extrapolation to full year keeping the same proportion

Total number of articles and free full texts in JoVE

As we can see on the left chart, plotting the total number of articles in JoVE -vs- time, there is a steady increase in the number of articles since 2006. This tend to prove that more and more scientists enjoy publishing videos. It would be nice to have access to JoVE statistics in order to see if there is the same increase in the overall number of views of all videos. With “web 2.0” and broadband access in universities, I guess we would see this increase.

However, as we can see on the right chart, plotting the percentage of JoVE “Free Full Texts” in PubMed -vs- time, there is a dramatic decrease in the percentage of Free Full Texts in JoVE since 2008-2009. Less and less videos are published and available for free in PubMed Central. This is unfortunate for the reader without subscription. This may also be unfortunate for the publisher since there are less and less authors over time who pay the premium for free access. But since authors also pays for closed access, there is certainly a financial equilibrium.

Some methodological caveats … The PMC Free Full Texts are not necessarily in free access on the JoVE website (and vice-versa ; all the ones I checked are but I didn’t check all of them!). This might explain why there is already a reduction in Free Full Texts in PMC in 2008 while JoVE closed their journal in April 2009. I expected the same proportion of free articles published until the end of 2011 than in the beginning of 2011 ; this might not be the case (let’s see in January 2012 ; this also leads to the question: “is there a seasonal trend in publishing in JoVE?”).

What I take as a (obvious) message is that if authors can pay less for the same publication, they will, regardless of how accessible and affordable the publication will be for the reader. I don’t blame anyone. But I can’t help thinking the Open Access model is better for the universal access to knowledge.

Photo credit: Sorry We’re Closed by Cinderella on Flickr (CC-by-nc-sa)

ForbidSleepingMode updated

Following some comments on the dependency to version 4 of the .Net framework, I rewrote ForbidSleepingMode in C++. You can open and compile the project with Qt (open source). The source code is of course updated. The mandatory screenshot as well 🙂

forbidSleepingMode screenshot

As you can see, I took the opportunity to add a small field where you can specify your own interval at which the program will “tickle” your computer.

We don’t need a computer at home

Historically, computers were invented to solve issues in the factory or the office (university office or company office) but recently invaded home and are becoming ubiquitous.

IBM System/370 Model 145

At the beginning of this invasion, computers for home were (and are still) very similar to the ones for the industry/office: a CPU, a keyboard to enter data or commands and a screen to see what was happening. Artifacts to be attached to the computer were first invented for the corporate world and then progressively entered into homes. I still remember the first mouse we had at home: it was like a mini-revolution. After years there were still some software that could not take advantage of it or its usage was implemented but in a rudimentary way. Idem for the first webcam we acquired: only the provided software was able to use it. Now it comes embedded in most computer screen and can be used for various purposes (video chat, take pictures, read bar codes, art, …).

More and more, computers are now declined its various avatars like calculators, mobile phones, game consoles, car dashboards, ATMs, cashiers, … All of them affect our daily lives in a way or another. But in my opinion the computer shouldn’t have left the corporate world. Its home avatars should have directly been via adapted technologies. Because Mr. and Mrs. Everyone don’t need any computer at home.

Although some bosses want their employees to behave differently, the factory/office is were we work and home is were we don’t work. At home, we read, eat, sleep, play, interact with other family members and neighbors, perform personal care, watch the television, etc. None of these activities requires a computer as we know it (CPU, keyboard, mouse and screen). However some of them can be enhanced or at least affected by it.

Whatever how it is materialized, a “computer” can enhance your reading experience. It can monitor your sleep while you snore or, more broadly, it can monitor your health while performing your daily activities. Computers can enhance your movie experience (by linking to related content, e.g.). They can help you improve your cooking skills and watch your savings.

Without pretending to know the future, I think miniaturization is and will put thing back “in order”: you will no longer have a computer on your desk but a bunch of small devices, each of them responsible for a small part of your daily life activities. You probably already have a mobile phone or a smartphone, i.e. a mini portable computer allowing us to phone. You probably already used a calculator, i.e. a mini portable computer specialized for calculus. Computer-like devices are becoming more and more small and powerful. They are also doing more than one simple thing at a time.

Another interesting trend is that computer-like devices are becoming more and more transparent, i.e. becoming more and more hidden or at least embedded in our daily lives. This is obviously allowed by miniaturization. The soda distributor contains a small computer-like device. Your electronic watch contains more electronics than ever. Your television screen is flat and is more capable but takes less space than your grandma’s television (relatively to the size of the screen of course).

To go beyond that, people started to experiment with wearable devices and electronics. These devices are part of your daily clothes. Currently these artifacts are merely gadgets and most of them are monitoring devices, just collecting and sometimes displaying information to the outside world. But other applications can be found like being able to carry your electronic documents (without the need for a USB key or CDs) or actually being your receiver/transmitter (“phone” without the actual plastic object we always lose somewhere when we need it). Without becoming cyborgs these guys below won’t soon need cellphones anymore:

Suits & Cells

Now is this an praise of closed platforms like the iPad, the iPod, etc.? No. I don’t say that no computer should be allowed at home: some people are working from home and they obviously need a computer. On top of that, in order to become part of our everyday habits, these devices would need to be transparent, open: people should be aware of what these devices are doing, what are their benefits and potentially what are the drawbacks of using / wearing them. One of the main concerns about these closed platforms and future platforms is privacy: how much of you do you agree to reveal “in exchange” of being empowered by these devices? I think people should be able to refuse to reveal anything and still be able to use these devices.

Photo credits: IBM System/370 Model 145 by John Keogh (CC-by-nc) and Suits & Cells by Alexa Clark (CC-by-nc), both on Flickr.